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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4488210_4488759_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4488210 - 4488759
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCCCA
5'SS Class:
major
3'SS Sequence:
AATTTTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATTAAAC
Flanking Amino Acid:
WDSIIQQATKNVDILKDPET
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.3
40.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
76.6
0.6
1
72.9
41.4
Minor 5ss
39.9
-1.1
3
49.3
40.8
Minor BPS
69.1
0.58
1.7
78.78
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004008
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004184
4485979 - 4494421
8443