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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4488944_4490415_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4488944 - 4490415
Intron Length:
1472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TAAAACTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTACCCAAATT
Flanking Amino Acid:
ENISAAIQANGEMVTKQPLI
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
71.4
0.48
1
66.5
44.2
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
56.3
0.27
2
81.49
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004008
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004184
4485979 - 4494421
8443