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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4490523_4490918_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4490523 - 4490918
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
ATTGTTATAACC
Flanking Amino Acid:
WVSRSNDPQMVAENFVPPLL
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
82.1
0.72
0.8
81.8
29
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
56
0.17
1.7
68.86
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004008
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004184
4485979 - 4494421
8443