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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4491114_4491768_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4491114 - 4491768
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTAAA
5'SS Class:
major
3'SS Sequence:
TATTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCCCCTCATT
Flanking Amino Acid:
FECTLNMINKDFEEYPEHRT
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
77.8
31.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.7
0.85
0.7
81.5
35.9
Minor 5ss
41.2
-1
2.5
51
45.5
Minor BPS
56.3
0.28
2.1
82.26
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004008
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004184
4485979 - 4494421
8443