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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44939006_44976706_F

Intron Information:

Intron Rank:
135515
Intron Class:
major
Intron Phase:
Intron Coordinates:
44939006 - 44976706
Intron Length:
37701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
ATTGCATTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
92.4
0.95
0.7
88.3
28.9
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
60
0.4
1.7
78.39
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022918
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030763
44938497 - 44977604
39108