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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44991154_44992994_F

Intron Information:

Intron Rank:
135521
Intron Class:
major
Intron Phase:
Intron Coordinates:
44991154 - 44992994
Intron Length:
1841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TACTAATTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
72.3
37.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
33.2
-1.9
3.2
40.6
40.8
Minor BPS
49.2
-0
1.8
61.3
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022918
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047133
44976707 - 44993380
16674