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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_44993083_45002537_F

Intron Information:

Intron Rank:
135516
Intron Class:
major
Intron Phase:
Intron Coordinates:
44993083 - 45002537
Intron Length:
9455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
ACTACCAAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
79.2
33.9
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
82.5
0.73
0.9
87.3
23.7
Minor 5ss
40.9
-1
2.8
58.9
39.3
Minor BPS
50.4
0.09
2
72.16
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022918
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031741
44992908 - 45003207
10300