About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_45286913_45299023_R

Intron Information:

Intron Rank:
137348
Intron Class:
major
Intron Phase:
Intron Coordinates:
45286913 - 45299023
Intron Length:
12111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
CTCAATTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTGTTCTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
78.6
0.64
0.9
72.3
37.3
Minor 5ss
35.7
-1.6
3.2
45.3
43.7
Minor BPS
63
0.49
1.6
75.27
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021389
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029840
45286451 - 45299486
13036
ENSAPLT00000044922
45286451 - 45299486
13036