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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_45376924_45390756_R

Intron Information:

Intron Rank:
148096
Intron Class:
major
Intron Phase:
Intron Coordinates:
45376924 - 45390756
Intron Length:
13833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTGT
5'SS Class:
major
3'SS Sequence:
CTTTTAATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
68.9
38.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.2
0.75
0.8
74.6
39
Minor 5ss
38.7
-1.3
3
54.8
43.5
Minor BPS
77.3
0.94
1
88.63
29.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026970
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043463
45376634 - 45391094
14461