About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_45404219_45405135_R

Intron Information:

Intron Rank:
148092
Intron Class:
major
Intron Phase:
Intron Coordinates:
45404219 - 45405135
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCTTC
5'SS Class:
major
3'SS Sequence:
CTCTTTATCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATCTCTTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
0.9
71
35.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.9
0.7
0.8
76
31.1
Minor 5ss
43.1
-0.8
3
55.7
43.3
Minor BPS
66.3
0.51
1.6
73.26
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026970
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029521
45403836 - 45406204
2369