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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4547005_4554957_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4547005 - 4554957
Intron Length:
7953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
TTTTCATCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTACATATAT
Flanking Amino Acid:
NNESLVSDTETSIAKELADW
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
72.7
44.5
Major BPS
100
1.24
0.5
100
0
Major PPT
82.2
0.73
0.7
74.9
35
Minor 5ss
36.5
-1.5
2.7
41.8
38.1
Minor BPS
49.8
0.06
2.1
79.75
41.4

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758