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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4557589_4558176_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4557589 - 4558176
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTAGTAACCT
Flanking Amino Acid:
STNLPMGNKKEEEELRRAAP
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
91.1
28.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83.7
0.76
0.7
82.4
29.5
Minor 5ss
40.6
-1.1
3.1
59.8
44.7
Minor BPS
45.4
-0.2
2.6
76.43
46

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005162
4519615 - 4629372
109758