Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4558980_4559557_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4558980 - 4559557

Intron Length:

578

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAGTG

5'SS Class:

strong_major

3'SS Sequence:

AAATACATTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAA

U12 Branch Point Sequence:

TTTTCCTCCAAT

Flanking Amino Acid:

HVQQRLSDTEESMQGSSDET

Intron Amino Acid Position:

558

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

78.9

35.3

Major BPS

77.8

0.69

78.2

31.8

Major PPT

66.1

0.36

60.4

44.5

Minor 5ss

-1.8

3.5

46.6

48.7

Minor BPS

59.9

0.39

2.1

85.81

40.1

Associated Gene:

Gene:

USP34

Ensembl Gene ID:

ENSAPLG00000004912

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005162

4519615 - 4629372

109758

ENSAPLT00000038677

4519615 - 4629372

109758