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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4560175_4560752_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4560175 - 4560752
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTAGC
5'SS Class:
major
3'SS Sequence:
TCCTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCCTCTTTTACA
Flanking Amino Acid:
HHHHHHHHHDGHMVDDMLSA
Intron Amino Acid Position:
763

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
67.1
44.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
87.8
0.85
0.7
82.7
25.9
Minor 5ss
34.2
-1.8
3
36.5
40.8
Minor BPS
64.6
0.45
1.6
70.65
41.9

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758