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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_45612397_45626288_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45612397 - 45626288
Intron Length:
13892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTGAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTCCCTGAAAG
Flanking Amino Acid:
PYQRIVTADRGNE*
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
85.3
27
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
65.2
0.34
1.1
67.2
33
Minor 5ss
40.1
-1.1
2.7
50.2
46
Minor BPS
64.3
0.31
1.7
71.81
40.2

Associated Gene:

Gene:
QKI
Ensembl Gene ID:
ENSAPLG00000010080
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010519
45612386 - 45771319
158934