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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_45626364_45628980_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
45626364 - 45628980
Intron Length:
2617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
GCAATTTAACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGTTTTCTAACT
Flanking Amino Acid:
EYPIEPSGVLGAVATKVRRH
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
55.1
0.12
1
48.3
43.8
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
67.4
0.62
1.6
84.98
35.2

Associated Gene:

Gene:
QKI
Ensembl Gene ID:
ENSAPLG00000010080
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029131
45620049 - 45771372
151324
ENSAPLT00000010519
45612386 - 45771319
158934