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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_45627135_45628980_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45627135 - 45628980
Intron Length:
1846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAACTTTTAATT
Flanking Amino Acid:
EYPIEPSGVLGMAFPTKG*
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.5
0.75
0.7
82.2
28.6
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
66.4
0.59
1.2
75
35.6

Associated Gene:

Gene:
QKI
Ensembl Gene ID:
ENSAPLG00000010080
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041081
45626940 - 45771319
144380