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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4562861_4562945_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4562861 - 4562945
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
CTATTTGCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
TATTCAGTGACC
Flanking Amino Acid:
LWDLVQDEDAIHLSEGLINE
Intron Amino Acid Position:
874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.61
1
69.1
38.5
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
74.5
0.55
0.9
69.8
36.4
Minor 5ss
41.8
-0.9
2.8
54.8
43.5
Minor BPS
51.7
0.03
2.3
72.08
39

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005162
4519615 - 4629372
109758
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758