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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_45629278_45631525_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45629278 - 45631525
Intron Length:
2248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGCATG
5'SS Class:
major
3'SS Sequence:
TTGCTTACTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TTCCTCTGAATT
Flanking Amino Acid:
GTYRDANIKSPALAFSLAAT
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.3
72.7
44.5
Major BPS
69.8
0.49
1
61
37.5
Major PPT
75.6
0.58
0.8
71
34.5
Minor 5ss
44.4
-0.6
2.8
57
40.8
Minor BPS
63.9
0.52
1.4
77.82
38.8

Associated Gene:

Gene:
QKI
Ensembl Gene ID:
ENSAPLG00000010080
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040750
45628124 - 45771319
143196
ENSAPLT00000029131
45620049 - 45771372
151324
ENSAPLT00000010519
45612386 - 45771319
158934
ENSAPLT00000042884
45620898 - 45771319
150422
ENSAPLT00000041081
45626940 - 45771319
144380