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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_45631614_45665374_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45631614 - 45665374
Intron Length:
33761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTGTTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TACTCCTGACTT
Flanking Amino Acid:
EEVKKLLIPAAEGEDSLKKM
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
86.2
0.81
0.8
80.7
35.9
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
57.5
0.31
1.8
73.86
43.2

Associated Gene:

Gene:
QKI
Ensembl Gene ID:
ENSAPLG00000010080
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010519
45612386 - 45771319
158934
ENSAPLT00000042884
45620898 - 45771319
150422
ENSAPLT00000041081
45626940 - 45771319
144380
ENSAPLT00000040750
45628124 - 45771319
143196
ENSAPLT00000029131
45620049 - 45771372
151324