About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_45665519_45709631_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45665519 - 45709631
Intron Length:
44113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CGTGTTTTATTT
Flanking Amino Acid:
GKGSMRDKKKEEQNRGKPNW
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
89.3
0.88
0.7
89
27.8
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
48.8
-0
1.7
63.03
42.4

Associated Gene:

Gene:
QKI
Ensembl Gene ID:
ENSAPLG00000010080
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042884
45620898 - 45771319
150422
ENSAPLT00000041081
45626940 - 45771319
144380
ENSAPLT00000029131
45620049 - 45771372
151324
ENSAPLT00000010519
45612386 - 45771319
158934