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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4569371_4569514_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4569371 - 4569514
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAATT
5'SS Class:
major
3'SS Sequence:
ATTGATATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTATTTTAACA
Flanking Amino Acid:
IQYINSYYINGKTGLEKEQE
Intron Amino Acid Position:
1129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
77.2
37.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
74.4
0.55
1
66.4
43.3
Minor 5ss
38.2
-1.3
3.4
54.4
44
Minor BPS
77.6
0.86
1.1
83.48
30.3

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758
ENSAPLT00000042626
4559498 - 4629372
69875