Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4569675_4570151_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4569675 - 4570151

Intron Length:

477

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATAGC

5'SS Class:

strong_major

3'SS Sequence:

CCTGCTTCTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

ATGTTTTTACCT

Flanking Amino Acid:

LKTHLEAFRRRFAYHLRQWQ

Intron Amino Acid Position:

1182

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

78.6

35.9

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

68.2

0.41

71.2

33.5

Minor 5ss

35.4

-1.7

2.8

45.8

42.3

Minor BPS

62.9

0.48

1.6

77.17

Associated Gene:

Gene:

USP34

Ensembl Gene ID:

ENSAPLG00000004912

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005162

4519615 - 4629372

109758

ENSAPLT00000042626

4559498 - 4629372

69875

ENSAPLT00000038677

4519615 - 4629372

109758