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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4570279_4570374_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4570279 - 4570374
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTAAA
5'SS Class:
major
3'SS Sequence:
TATTTGATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TGTGCTTCAAAA
Flanking Amino Acid:
VCQPAGLPDKMTIEMYPSDQ
Intron Amino Acid Position:
1225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.1
35
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
81.5
0.71
0.9
78.3
39.6
Minor 5ss
33.7
-1.9
2.9
41.9
44.8
Minor BPS
52.8
0.08
1.7
65.65
40.6

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758