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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_45709749_45733563_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45709749 - 45733563
Intron Length:
23815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTATAGAAAA
Flanking Amino Acid:
LYVPVKEYPDFNFVGRILGP
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
47.6
-0.1
1.9
67.94
37.6

Associated Gene:

Gene:
QKI
Ensembl Gene ID:
ENSAPLG00000010080
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041081
45626940 - 45771319
144380
ENSAPLT00000040750
45628124 - 45771319
143196
ENSAPLT00000029131
45620049 - 45771372
151324
ENSAPLT00000010519
45612386 - 45771319
158934
ENSAPLT00000042884
45620898 - 45771319
150422