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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_45733707_45771177_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45733707 - 45771177
Intron Length:
37471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCCC
5'SS Class:
major
3'SS Sequence:
TTTCCCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTGTATTTAATA
Flanking Amino Acid:
FNHLERLLDEEISRVRKDMY
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
63.8
40.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.2
0.66
0.7
73.1
25.2
Minor 5ss
31.4
-2.1
3.3
42.6
44.4
Minor BPS
62.4
0.39
1.5
67.55
39.7

Associated Gene:

Gene:
QKI
Ensembl Gene ID:
ENSAPLG00000010080
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040750
45628124 - 45771319
143196
ENSAPLT00000029131
45620049 - 45771372
151324
ENSAPLT00000010519
45612386 - 45771319
158934
ENSAPLT00000042884
45620898 - 45771319
150422
ENSAPLT00000041081
45626940 - 45771319
144380