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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4573700_4574295_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4573700 - 4574295
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATAGT
5'SS Class:
major
3'SS Sequence:
TCTCTGTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCTTCCTCATTG
Flanking Amino Acid:
LHELGFKDMQMVFVSLGAPR
Intron Amino Acid Position:
1308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.8
38.2
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
80.3
0.68
0.8
72.8
37.5
Minor 5ss
42.9
-0.8
2.7
60.2
44.3
Minor BPS
54.9
0.02
1.9
63.32
45

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758
ENSAPLT00000042626
4559498 - 4629372
69875