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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4579342_4580702_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4579342 - 4580702
Intron Length:
1361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACAATAT
5'SS Class:
major
3'SS Sequence:
TCTTCCTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
ATGGCTTTATCT
Flanking Amino Acid:
VAYTYDNLAPRVLKAQSDHR
Intron Amino Acid Position:
1612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
71.2
35.1
Major BPS
77.3
0.68
1
81.5
27
Major PPT
82
0.72
0.8
80.6
31.4
Minor 5ss
37.9
-1.4
3.4
55.8
48.4
Minor BPS
58.5
0.34
1.7
73.68
43.7

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758