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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4580744_4581684_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4580744 - 4581684
Intron Length:
941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CATTTCCTATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTACTCTCATCT
Flanking Amino Acid:
AQSDHRSRHEVTHYSMWLLV
Intron Amino Acid Position:
1626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1.2
78.8
35.5
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
72.2
0.5
0.9
71.5
33.9
Minor 5ss
30.7
-2.2
3.1
42.2
44.4
Minor BPS
53
0.17
1.8
74.57
41.8

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758