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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_45816969_45910554_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45816969 - 45910554
Intron Length:
93586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTAATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTTTTATTAATC
Flanking Amino Acid:
PVLNIFKNMNVNSGDGIDYS
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
81.9
26.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.5
0.64
1
79.1
38.2
Minor 5ss
36.6
-1.5
3
45.9
43.7
Minor BPS
67.9
0.54
1.5
75.99
33.9

Associated Gene:

Gene:
PACRG
Ensembl Gene ID:
ENSAPLG00000010267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010685
45816808 - 46033918
217111