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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4585376_4585478_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4585376 - 4585478
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTATATATATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ATTTCTTTTATA
Flanking Amino Acid:
LARHLADCIRSREILDHQDG
Intron Amino Acid Position:
1744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
88.6
27.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
68.8
0.42
1
62.8
42.4
Minor 5ss
42.7
-0.8
3.4
64.1
47.4
Minor BPS
68.2
0.57
1.5
77.18
34.1

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005162
4519615 - 4629372
109758
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758