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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4585600_4587871_F

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4585600 - 4587871
Intron Length:
2272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
AATTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
AATTGTTTTACA
Flanking Amino Acid:
PPFKFSREGQEFLRDIFNLL
Intron Amino Acid Position:
1785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
80.1
0.68
0.9
72.9
41.4
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
51.2
0.03
2
66.46
40.2

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758