About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4588056_4593598_F

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4588056 - 4593598
Intron Length:
5543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGAACC
5'SS Class:
major
3'SS Sequence:
GTACTTCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
ATGTGCTTACGT
Flanking Amino Acid:
HNWVMAQHMQSSHAPYKWDY
Intron Amino Acid Position:
1846

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
65.5
38.7
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
78.7
0.64
0.9
69.7
41.3
Minor 5ss
36.7
-1.5
3
46.3
41.5
Minor BPS
47.8
-0
2.3
69.62
47.3

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758