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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_45910705_45921311_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45910705 - 45921311
Intron Length:
10607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTGAA
5'SS Class:
major
3'SS Sequence:
TCCTACATCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTTCCTACATC
Flanking Amino Acid:
VIPQLIIPIKNALSLRNRQV
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.3
34.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
71.9
0.49
0.9
65
34.7
Minor 5ss
32.3
-2
3.4
39.2
41
Minor BPS
54.6
0.13
2.1
69.44
42.9

Associated Gene:

Gene:
PACRG
Ensembl Gene ID:
ENSAPLG00000010267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010685
45816808 - 46033918
217111