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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_45921484_45984425_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45921484 - 45984425
Intron Length:
62942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTGACT
Flanking Amino Acid:
DTKGNKIAWKVEIEKLDYHY
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.6
0.76
0.8
82.1
34.6
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
71.2
0.75
1.4
86.4
32.8

Associated Gene:

Gene:
PACRG
Ensembl Gene ID:
ENSAPLG00000010267
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010685
45816808 - 46033918
217111