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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4594912_4596070_F

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4594912 - 4596070
Intron Length:
1159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
TTTTTACCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTTTTACCT
Flanking Amino Acid:
ELQKMFTYLMESECKAYNPR
Intron Amino Acid Position:
1923

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
71.5
38.5
Major BPS
100
1.24
0.5
100
0
Major PPT
76
0.59
1
76.4
31.6
Minor 5ss
34.1
-1.8
3.5
46.6
44.1
Minor BPS
68.3
0.65
1.5
83.9
37.2

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758