About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4599291_4600633_F

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4599291 - 4600633
Intron Length:
1343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TACTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TACTCTTTTACA
Flanking Amino Acid:
VNPHAYKNNKWYLFNDAEVK
Intron Amino Acid Position:
2157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
81.9
26.3
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
85.2
0.79
0.8
79.6
32
Minor 5ss
36.6
-1.5
3
45.9
43.7
Minor BPS
65.4
0.48
1.6
71.9
40.1

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758