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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4601607_4601701_F

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4601607 - 4601701
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCTC
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTCAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TTTTTCTTCAAG
Flanking Amino Acid:
DKFMDFSFEKTHSAYMLFYK
Intron Amino Acid Position:
2202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
70.7
39.5
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
84
0.76
0.9
83.6
31.9
Minor 5ss
44.9
-0.5
2.8
62
42.6
Minor BPS
60.5
0.18
2
72.05
40.8

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758