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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4601798_4603370_F

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4601798 - 4603370
Intron Length:
1573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAAGTT
5'SS Class:
major
3'SS Sequence:
ATTTTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTCTTGTATCT
Flanking Amino Acid:
KFDVSSELLEWIWHDNMQFL
Intron Amino Acid Position:
2234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
72.5
37.2
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
90.9
0.92
0.7
89.5
26.5
Minor 5ss
34.6
-1.7
3.8
55.8
48.4
Minor BPS
48.8
-0
2.2
76.38
40.7

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758