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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4606179_4607454_F

Intron Information:

Intron Rank:
58
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4606179 - 4607454
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATCATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
ATTTACTTATCA
Flanking Amino Acid:
IKCPNQIVRQMFQRLCIHVI
Intron Amino Acid Position:
2346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
83.3
0.75
0.8
77.8
35.2
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
66.6
0.52
1.8
79.12
36.8

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758