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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4607541_4608389_F

Intron Information:

Intron Rank:
59
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4607541 - 4608389
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAATAA
5'SS Class:
major
3'SS Sequence:
ATTATGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
AATGTCTAAATC
Flanking Amino Acid:
HLYLQPGMEDCSDDMDGPVE
Intron Amino Acid Position:
2374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
69
31.3
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
81.1
0.7
0.9
77.5
41
Minor 5ss
36.7
-1.5
3.1
43.7
45.9
Minor BPS
51.6
0.03
1.7
60.96
38.9

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005162
4519615 - 4629372
109758
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758