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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4608559_4608640_F

Intron Information:

Intron Rank:
60
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4608559 - 4608640
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
GTACATATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTCAAGTAACT
Flanking Amino Acid:
YEFAKMGEEESQFLLSLQAI
Intron Amino Acid Position:
2431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.8
86
23.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71.3
0.48
1
66.7
43.4
Minor 5ss
35.6
-1.6
2.8
42.6
38.4
Minor BPS
48.9
-0
2.4
80.09
41.1

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758