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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4608716_4609064_F

Intron Information:

Intron Rank:
61
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4608716 - 4609064
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TATATATTATTT
Flanking Amino Acid:
FYMGTKGPENPQVEVLSEEE
Intron Amino Acid Position:
2456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
94.3
1
0.5
93.3
15.5
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
49.4
0.04
1.8
70.81
40.1

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758