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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4609217_4609660_F

Intron Information:

Intron Rank:
62
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4609217 - 4609660
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TCTGAAGTAAAA
Flanking Amino Acid:
ALLVEQSRSERHLTLSQNDM
Intron Amino Acid Position:
2506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.8
86.4
26.9
Major BPS
68
0.45
1
57.8
39
Major PPT
85.6
0.8
0.7
84.6
30.3
Minor 5ss
22.7
-3.1
4.1
39.2
46.2
Minor BPS
40.1
-0.7
2.4
54.52
43.8

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758