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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4610081_4611499_F

Intron Information:

Intron Rank:
65
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4610081 - 4611499
Intron Length:
1419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATGCGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
FTSIAKLTPEAANPFFKLLT
Intron Amino Acid Position:
2573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76
0.59
1
68.8
41.8
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758
ENSAPLT00000042626
4559498 - 4629372
69875