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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4614164_4615106_F

Intron Information:

Intron Rank:
67
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4614164 - 4615106
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TTATTATTTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
LAHNYPRVRTSAAYLLVSLI
Intron Amino Acid Position:
2657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75
30.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75
0.56
1.1
76.3
36.8
Minor 5ss
42.1
-0.9
2.8
55
43.6
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758