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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4618521_4621248_F

Intron Information:

Intron Rank:
70
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4618521 - 4621248
Intron Length:
2728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATAAA
U12 Branch Point Sequence:
GCAACATAAAGT
Flanking Amino Acid:
FNRGLILMTESFNTLHMMYH
Intron Amino Acid Position:
2948

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
57.2
0.18
1.1
58.3
34.3
Major PPT
87.6
0.85
0.6
85
22.5
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
42.3
-0.5
2.1
55.46
45.8

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005162
4519615 - 4629372
109758
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758