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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4621376_4621712_F

Intron Information:

Intron Rank:
71
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4621376 - 4621712
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGATTA
5'SS Class:
major
3'SS Sequence:
TTTACCTTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTTTTTTACCT
Flanking Amino Acid:
KSTRPYLQRKDVKQALIQWQ
Intron Amino Acid Position:
2990

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
71.6
34.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.1
0.72
0.8
77
31.5
Minor 5ss
44
-0.7
2.8
56.7
47.4
Minor BPS
68.3
0.65
1.6
83.79
37.4

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758
ENSAPLT00000042626
4559498 - 4629372
69875