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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4623018_4623141_F

Intron Information:

Intron Rank:
73
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4623018 - 4623141
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
ACTTGTACTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTATCCTAACT
Flanking Amino Acid:
HCTYHHSNIPMSLGPYFPCR
Intron Amino Acid Position:
3061

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
84.6
33.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.9
0.54
0.9
66.2
39
Minor 5ss
42
-0.9
3.2
59.7
39.1
Minor BPS
69.8
0.7
1.7
89.4
34.5

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758