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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4623267_4625437_F

Intron Information:

Intron Rank:
74
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4623267 - 4625437
Intron Length:
2171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTAAATCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTTCTCTTAAAT
Flanking Amino Acid:
LLPTMVEASKGKDDVYDRML
Intron Amino Acid Position:
3103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73.3
0.52
1
62.8
42.9
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
71.4
0.75
1.4
83.62
36.4

Associated Gene:

Gene:
USP34
Ensembl Gene ID:
ENSAPLG00000004912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042626
4559498 - 4629372
69875
ENSAPLT00000038677
4519615 - 4629372
109758
ENSAPLT00000005162
4519615 - 4629372
109758